You will need to do all of this via the command line. Given you're already dealing with Base64 data I am going to assume you know how to bring that up on your operating system. Scroll down to the relevant section based on your OS below, also substitute your file names as appropriate.
I am going to use .txt for the decoded data file extension and .b64 for the Base64 encoded file extension.
Linux
Encode a data file to Base64
base64 data.txt > data.b64
Decode a Base64 file
base64 -d data.b64 > data.txt
Windows
Encode a data file to Base64
certutil -encode data.txt tmp.b64 && findstr /v /c:- tmp.b64 > data.b64
Decode a Base64 file
certutil -decode data.b64 data.txt
Note: encoding with the above command will leave a temporary file, tmp.b64, on your file system. If you do not wish to have that file present simply add this to the end of the command: && del tmp.b64
macOS
Encode a data file to Base64
base64 -i data.txt -o data.b64
Decode a Base64 file
base64 -D -i data.b64 -o data.txt
-i